AIRR Software WG - List of Tools Certified as Compliant¶

The following tools have been certified as compliant with v1.0 of the guidelines:

Software	Version	Support	Reference
SONAR	3	Output	Schramm et al. Front Immunol, 2016.
ImmuneDB	0.29.10	Input	Rosenfeld et al. Front Immunol, 2018,
Scirpy	0.4.2	Input	Sturm et al. Bioinformatics, 2020,
Immcantation Framework	4	Input, Output	Vander Heiden et al. Bioinformatics, 2014,; Gupta et al., Bioinformatics, 2015,
CompAIRR	1.3.1	Input	Rognes T, Scheffer L, Greiff V, Sandve GK 2021 (preprint),
ImmuneML	2.0.4	Input, Output	Pavlovic et al., BioRxiv, 2021 immuneML: an ecosystem for machine learning analysis of adaptive immune receptor repertoires (preprint),
Dandelion	0.1.10	Output	Stephenson et al., Nature Medicine, 2021 Single-cell multi-omics analysis of the immune response in COVID-19,

AIRR Standards 1.3 documentation