logo

AIRR Standards 1.4 documentation

  • Getting Started
    • AIRR Rearrangement TSV Interoperability Example
    • ADC API Query and Analysis Example
    • Scientific Query Scenarios for AIRR Data Commons API
  • Release Notes
  • AIRR Standards
    • Study Reporting (MiAIRR)
      • MiAIRR Data Elements
      • National Center for Biotechnology Information (NCBI) Submission
        • Guide for submission of AIRR-seq data to NCBI
        • MiAIRR-to-NCBI Submission Manual
        • MiAIRR-to-NCBI Specification
      • Requirement levels of fields
      • Metadata annotation guidelines
    • Data Model
      • Requirement levels of fields
      • Repertoire Schema
      • Rearrangement Schema
      • Alignment Schema (Experimental)
      • Clone and Lineage Tree Schema (Experimental)
      • Cell Schema (Experimental)
      • Cell Expression Schema (Experimental)
      • Germline Schema (Experimental)
      • Receptor Schema (Experimental)
    • V(D)J Sequence Representation
    • Metadata Representation
    • Software Guidelines
      • Compliance Checklist for AIRR Software Tools
      • List of Compliant Tools
      • Recommended Software Evaluation Data Sets
    • Data Commons API
    • Ontologies and Vocabularies
      • Report Sprint 11/2018
      • Report Sprint 04/2020
      • Report Sprint 04/2021
    • Schema Release Notes
  • Data Submission and Query
    • MiAIRR to NCBI submission guide
      • Guide for submission of AIRR-seq data to NCBI
      • MiAIRR-to-NCBI Submission Manual
      • MiAIRR-to-NCBI Specification
    • CEDAR's CAIRR submission pipeline
    • VDJServer Community Data Portal
    • iReceptor Turnkey Repository
    • OGRDB
      • The Genbank/ENA Workflow.
    • AIRR Data Commons
  • Software
    • Python Library
      • API Reference
      • Commandline Tools
      • Release Notes
    • R Library
      • Usage Vignette
      • Reference Manual
        • read_tabular
        • read_airr
        • write_tabular
        • write_airr
        • validate_tabular
        • validate_airr
        • load_schema
        • Schema-class
        • ExampleData
      • Release Notes
    • ADC API Reference Implementation
    • Applications Supporting the Rearrangement Schema
    • AIRR Data Commons Repositories
  • Community
    • Applications Supporting the Rearrangement Schema
    • AIRR Data Commons Repositories
  • Glossary
  • References
Theme by the Executable Book Project
  • .rst

AIRR Software WG - List of Tools Certified as Compliant

AIRR Software WG - List of Tools Certified as Compliant#

The following tools have been certified as compliant with v1.0 of the guidelines:

Software

Version

Support

Reference

SONAR

3

Output

Schramm et al. Front Immunol, 2016.

ImmuneDB

0.29.10

Input

Rosenfeld et al. Front Immunol, 2018,

Scirpy

0.4.2

Input

Sturm et al. Bioinformatics, 2020,

Immcantation Framework

4

Input, Output

Vander Heiden et al. Bioinformatics, 2014,; Gupta et al., Bioinformatics, 2015,

CompAIRR

1.3.1

Input

Rognes T, Scheffer L, Greiff V, Sandve GK, BioRxiv, 2021 (preprint),

ImmuneML

2.0.4

Input, Output

Pavlovic et al., BioRxiv, 2021 (preprint),

Dandelion

0.1.10

Output

Stephenson et al., Nature Medicine, 2021,

TRUST4

1.0.8

Output

Song, L., Cohen, D., Ouyang, Z. et al., Nature Methods, 2021,

previous

AIRR Software WG - Compliance Checklist for AIRR Software Tools

next

Evaluation Data Sets

By AIRR Community
© Copyright 2017-2021, AIRR Community.