AIRR R Reference Library

airr is an R package for working with data formatted according to the AIRR Standards schemas. It includes the full set of schema definitions along with simple functions for read, write and validation.

Table of Contents

• Usage Vignette
• Reference Manual
• Release Notes

Download & Installation

To install the latest release from CRAN:

install.packages("airr")

To build from the source code, first install the build dependencies:

install.packages(c("devtools", "roxygen2"))

To install the latest development code via devtools:

library(devtools)
install_github("airr-community/airr-standards/lang/R@master")

Note, using install_github will not build the documentation. To generate the documentation, clone the repository, and then build as normal using the following R commands from the package root lang/R:

library(devtools)
install_deps(dependencies=T)
document()
install()

Dependencies

Depends: FALSE

Imports: jsonlite, methods, readr, stats, stringi, tools, yaml

Suggests: knitr, rmarkdown, tibble, testthat

Authors

Jason Vander Heiden (aut, cre)

Susanna Marquez (aut)

Scott Christley (aut)

Katharina Imkeller (aut)

Ulrik Stervbo (aut)

AIRR Community (cph)

License

CC BY 4.0