Release Notes#
Version 1.4.1: August 27, 2022#
Significant internal refactoring to improve schema generalizability, harmonize behavior between the python and R libraries, and prepare for AIRR Standards v2.0.
Rearrangement:
Added the
aux_types
argument toread_tabular
,read_rearrangement
, andread_alignment
to allow explicit declaration of the type for fields that are not defined in the schema.Renamed
read_airr
,write_airr
, andvalidate_airr
toread_tabular
,validate_tabular
, andvalidate_tabular
, respectively.
Data Model and Schema:
Defined new
read_airr
,write_airr
, andvalidate_airr
functions that support AIRR Data Model files that store arrays of objects in JSON or YAML.Added support for the AIRR Model Data File and associated schema (DataFile, Info). The Data File data format holds AIRR object of multiple types and is backwards compatible with Repertoire metadata.
Added support for the new germline and genotyping schema (GermlineSet, GenotypeSet) and associated schema.
Version 1.3.0: May 26, 2020#
Updated schema set to v1.3.
Added
info
slot toSchema
object containing general schema information.
Version 1.2.0: August 17, 2018#
Updated schema set to v1.2.
Changed defaults to
base="1"
for read and write functions.Updated example TSV file with coordinate changes, addition of
germline_alignment
data and simplification ofsequence_id
values.
Version 1.1.0: May 1, 2018#
Initial release.