validate_tabular

validate_tabular#

Validate tabular AIRR data

Description#

validate_tabular validates compliance of the contents of a data.frame to the AIRR standards.

Usage#

validate_tabular(data, schema)

validate_rearrangement(data)

Arguments#

data

data.frame of tabular data to validate.

schema

Schema object defining the data standard of the table.

Value#

Returns TRUE if the input data is compliant and FALSE if not.

Details#

validate_rearrangement validates the standards compliance of AIRR Rearrangement data stored in a data.frame

Examples#

# Get path to the rearrangement-example file
file <- system.file("extdata", "rearrangement-example.tsv.gz", package="airr")

# Load data file
df <- read_rearrangement(file)

# Validate a data.frame against the Rearrangement schema
validate_rearrangement(df)

[1] TRUE
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