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AIRR Standards 1.4 documentation - Home
  • Getting Started
    • AIRR Rearrangement TSV Interoperability Example
    • ADC API Query and Analysis Example
    • Scientific Query Scenarios for AIRR Data Commons API
  • Release Notes
  • AIRR Standards
    • Study Reporting (MiAIRR)
      • MiAIRR Data Elements
      • National Center for Biotechnology Information (NCBI) Submission
        • Guide for submission of AIRR-seq data to NCBI
        • MiAIRR-to-NCBI Submission Manual
        • MiAIRR-to-NCBI Specification
      • Requirement levels of fields
      • Metadata annotation guidelines
    • Data Model
      • Requirement levels of fields
      • Repertoire Schema
      • Rearrangement Schema
      • Alignment Schema (Experimental)
      • Clone and Lineage Tree Schema (Experimental)
      • Cell Schema (Experimental)
      • Cell Expression Schema (Experimental)
      • Germline Schema (Experimental)
      • Receptor Schema (Experimental)
    • V(D)J Sequence Representation
    • Metadata Representation
    • Software Guidelines
      • Compliance Checklist for AIRR Software Tools
      • List of Compliant Tools
      • Recommended Software Evaluation Data Sets
    • Data Commons API
    • Ontologies and Vocabularies
      • Report Sprint 11/2018
      • Report Sprint 04/2020
      • Report Sprint 04/2021
    • Schema Release Notes
  • Data Submission and Query
    • MiAIRR to NCBI submission guide
      • Guide for submission of AIRR-seq data to NCBI
      • MiAIRR-to-NCBI Submission Manual
      • MiAIRR-to-NCBI Specification
    • CEDAR's CAIRR submission pipeline
    • VDJServer Community Data Portal
    • iReceptor Turnkey Repository
    • OGRDB
      • The Genbank/ENA Workflow.
    • AIRR Data Commons
  • Software
    • Python Library
      • API Reference
      • Commandline Tools
      • Release Notes
    • R Library
      • Usage Vignette
      • Reference Manual
        • read_tabular
        • read_airr
        • write_tabular
        • write_airr
        • validate_tabular
        • validate_airr
        • load_schema
        • Schema-class
        • ExampleData
      • Release Notes
    • ADC API Reference Implementation
    • Applications Supporting the Rearrangement Schema
    • AIRR Data Commons Repositories
  • Community
    • Applications Supporting the Rearrangement Schema
    • AIRR Data Commons
  • Glossary
  • References
  • .rst

Software

Contents

  • AIRR Standards Reference Implementations
  • Resources and Tools Supporting AIRR Standards

Software#

AIRR Standards Reference Implementations#

  • Python Library
    • API Reference
    • Commandline Tools
    • Release Notes
    • Installation
    • Quick Start
  • R Library
    • Usage Vignette
    • Reference Manual
    • Release Notes
    • Download & Installation
    • Dependencies
    • Authors
    • License
  • ADC API Reference Implementation

Resources and Tools Supporting AIRR Standards#

  • Applications Supporting the Rearrangement Schema
  • AIRR Data Commons Repositories

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AIRR Data Commons

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AIRR Python Reference Library
Contents
  • AIRR Standards Reference Implementations
  • Resources and Tools Supporting AIRR Standards

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