AIRR Software WG - List of Tools Certified as CompliantΒΆ

The following tools have been certified as compliant with v1.0 of the guidelines:

Software

Version

Support

Reference

SONAR

3

Output

Schramm et al. Front Immunol, 2016.

ImmuneDB

0.29.10

Input

Rosenfeld et al. Front Immunol, 2018,

Scirpy

0.4.2

Input

Sturm et al. Bioinformatics, 2020,

Immcantation Framework

4

Input, Output

Vander Heiden et al. Bioinformatics, 2014,; Gupta et al., Bioinformatics, 2015,

CompAIRR

1.3.1

Input

Rognes T, Scheffer L, Greiff V, Sandve GK (2021) CompAIRR: ultra-fast comparison of adaptive immune receptor repertoires by exact and approximate sequence matching. (in prep.)