Cell Schema (Experimental)

Cell Schema (Experimental)

The cell object acts as point of reference for all data that can be related to an individual cell, either by direct observation or inference.

File Format Specification

The file format has not been specified yet.

Cell Fields

Download as TSV

Name

Type

Attributes

Definition

cell_id

string

required

Identifier defining the cell of origin for the query sequence.

rearrangements

array of string

required, nullable

Array of sequence identifiers defined for the Rearrangement object

receptors

array of string

optional, nullable

Array of receptor identifiers defined for the Receptor object

repertoire_id

string

required, nullable

Identifier to the associated repertoire in study metadata.

data_processing_id

string

optional, nullable

Identifier of the data processing object in the repertoire metadata for this clone.

expression_study_method

string

optional, nullable

keyword describing the methodology used to assess expression. This values for this field MUST come from a controlled vocabulary

expression_raw_doi

string

optional, nullable

DOI of raw data set containing the current event

expression_index

string

optional, nullable

Index addressing the current event within the raw data set.

expression_tabular

array of object

optional, nullable

Expression definitions for single-cell

virtual_pairing

boolean

required, nullable

boolean to indicate if pairing was inferred.