AIRR Data Representation Reference Library

airr is an R package for working with data formatted according to the AIRR Data Representation schemas. It includes the full set of schema definitions along with simple functions for read, write and validation.

Download & Installation

To install the latest release from CRAN:

install.packages("airr")

To build from the source code, first install the build dependencies:

install.packages(c("devtools", "roxygen2"))

To install the latest development code via devtools:

library(devtools)
install_github("airr-community/airr-standards/lang/[email protected]")

Note, using install_github will not build the documentation. To generate the documentation, clone the repository, and then build as normal using the following R commands from the package root lang/R:

library(devtools)
install_deps(dependencies=T)
document()
install()

Dependencies

Imports: methods, readr, stats, stringi, yaml
Suggests: knitr, rmarkdown, testthat

Authors

AIRR Community (cph)

License

CC BY 4.0