AIRR Python Library |
1.2 |
Input, output and validation |
Vander Heiden et al. Front Immunol, 2018. |
AIRR R Library |
1.2 |
Input, output and validation |
Vander Heiden et al. Front Immunol, 2018. |
Alakazam |
1.0.1 |
Input and output |
Gupta & Vander Heiden et al. Bioinformatics, 2015. |
Cell Ranger |
4.0 |
Output |
10x Genomics, Inc. Pleasanton, CA USA. |
Change-O |
0.4.2 |
Input, output and conversion |
Gupta & Vander Heiden et al. Bioinformatics, 2015. |
compAIRR |
0.2.0 |
Input |
Rognes et al. Bioinformatics, 2022. |
Decombinator |
4.0.1 |
Output |
Oakes et al. Front Immunol, 2017. |
dowser |
0.1.0 |
Input |
Hoehn et al. PLoS Comput Biol, 2022. |
IMGT/HighV-QUEST |
1.7.0 |
Output |
Alamyar et al. Methods Mol Biol, 2012. |
IMGT/V-QUEST |
3.5.16 |
Output |
Giudicelli et al. Cold Spring Harb Protoc, 2011. |
IgBLAST |
1.11 |
Output |
Ye et al. Nucleic Acids Res, 2013. |
immunarch |
0.6.5 |
Input |
ImmunoMind Team. 2019 |
ImmuneDB |
0.24.0 |
Output |
Rosenfeld et al. Front Immunol, 2018. |
immuneML |
2.0.0 |
Input |
Pavlovic et al. Nat Mach Intell, 2021. |
immuneSIM |
0.8.7 |
Output |
Weber et al. Bioinformatics, 2020. |
iReceptor |
3.0 |
Input and output |
Corrie et al. Immunol Rev, 2018. |
MiXCR |
4.0 |
Output |
Bolotin et al. Nat Methods, 2015. |
RAbHIT |
0.1.5 |
Input and output |
Gidoni et al. Nat Commun, 2019. |
scirpy |
0.7 |
Input and output |
Sturm et al. Bioinformatics, 2020. |
SCOPer |
1.0.1 |
Input and output |
Nouri & Kleinstein. Bioinformatics, 2018. |
SHazaM |
1.0.0 |
Input and output |
Gupta & Vander Heiden et al. Bioinformatics, 2015. |
SONAR |
3 |
Output |
Schramm et al. Front Immunol, 2016. |
sumrep |
1.0 |
Input |
Olson et al. Front Immunol, 2019. |
TIgGER |
1.0.0 |
Input and output |
Gadala-Maria et al. PNAS, 2015. |
TRIgS |
2 |
Input |
Lees & Shepherd. J Immunol Res, 2015. |
VDJServer |
1.2.0 |
Input and output |
Christley et al. Front Immunol, 2018 |
Vidjil-algo |
2018.1 |
Output |
Giraud et al. BMC Genomics, 2014. |
