AIRR Standards 1.3 documentation
Getting Started
Release Notes
AIRR Standards
Data Submission and Query
Software
Community
Glossary
References
Index
Symbols
|
_
|
A
|
C
|
D
|
E
|
F
|
I
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
V
|
W
Symbols
--drop
airr-tools-merge command line option
--version
airr-tools command line option
airr-tools-merge command line option
airr-tools-validate command line option
airr-tools-validate-rearrangement command line option
airr-tools-validate-repertoire command line option
-a <airr_files>
airr-tools-merge command line option
airr-tools-validate-rearrangement command line option
airr-tools-validate-repertoire command line option
-h, --help
airr-tools command line option
airr-tools-merge command line option
airr-tools-validate command line option
airr-tools-validate-rearrangement command line option
airr-tools-validate-repertoire command line option
-o <out_file>
airr-tools-merge command line option
_
__init__() (airr.io.RearrangementReader method)
(airr.io.RearrangementWriter method)
__iter__() (airr.io.RearrangementReader method)
__next__() (airr.io.RearrangementReader method)
A
airr-tools command line option
--version
-h, --help
airr-tools-merge command line option
--drop
--version
-a <airr_files>
-h, --help
-o <out_file>
airr-tools-validate command line option
--version
-h, --help
airr-tools-validate-rearrangement command line option
--version
-a <airr_files>
-h, --help
airr-tools-validate-repertoire command line option
--version
-a <airr_files>
-h, --help
AlignmentSchema (in module airr.schema)
C
close() (airr.io.RearrangementReader method)
(airr.io.RearrangementWriter method)
create_rearrangement() (in module airr)
D
derive_rearrangement() (in module airr)
dump_rearrangement() (in module airr)
E
external_fields (airr.io.RearrangementReader attribute)
(airr.io.RearrangementWriter attribute)
F
false_values (airr.schema.Schema attribute)
(in module airr.schema)
,
[1]
,
[2]
fields (airr.io.RearrangementReader attribute)
(airr.io.RearrangementWriter attribute)
from_bool() (airr.schema.Schema method)
I
info (airr.schema.Schema attribute)
(in module airr.schema)
,
[1]
,
[2]
L
load_rearrangement() (in module airr)
load_repertoire() (in module airr)
M
merge_rearrangement() (in module airr)
N
next() (airr.io.RearrangementReader method)
O
optional (airr.schema.Schema attribute)
(in module airr.schema)
,
[1]
,
[2]
P
properties (airr.schema.Schema attribute)
(in module airr.schema)
,
[1]
,
[2]
R
read_rearrangement() (in module airr)
RearrangementReader (class in airr.io)
RearrangementSchema (in module airr.schema)
RearrangementWriter (class in airr.io)
repertoire_template() (in module airr)
RepertoireSchema (in module airr.schema)
required (airr.schema.Schema attribute)
(in module airr.schema)
,
[1]
,
[2]
S
Schema (class in airr.schema)
spec() (airr.schema.Schema method)
T
to_bool() (airr.schema.Schema method)
to_float() (airr.schema.Schema method)
to_int() (airr.schema.Schema method)
true_values (airr.schema.Schema attribute)
(in module airr.schema)
,
[1]
,
[2]
type() (airr.schema.Schema method)
V
validate_header() (airr.schema.Schema method)
validate_object() (airr.schema.Schema method)
validate_rearrangement() (in module airr)
validate_repertoire() (in module airr)
validate_row() (airr.schema.Schema method)
W
write() (airr.io.RearrangementWriter method)
write_repertoire() (in module airr)