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Applications Supporting the Rearrangement Schema

The following list of software tools and databases support the TSV format of v1.2 of the AIRR Rearrangement schema.

Software	Version	Support	Reference
AIRR Python Library	1.2	Input, output and validation	Vander Heiden et al. Front Immunol, 2018.
AIRR R Library	1.2	Input, output and validation	Vander Heiden et al. Front Immunol, 2018.
Decombinator	4.0.1	Output	Oakes et al. Front Immunol, 2017.
IMGT/V-QUEST	3.5.16	Output	Giudicelli et al. Cold Spring Harb Protoc, 2011.
IgBLAST	1.11	Output	Ye et al. Nucleic Acids Res, 2013.
IGoR	TBD	Input and output	Marcou et al. Nat Commun, 2018.
Immcantation:Change-O	0.4.2	Input, output and conversion	Gupta & Vander Heiden et al. Bioinformatics, 2015.
ImmuneDB	0.24.0	Output	Rosenfeld et al. Front Immunol, 2018.
iReceptor	2	Input and output	Corrie et al. Immunol Rev, 2018.
MiXCR	2.2.1	Output	Bolotin et al. Nat Methods, 2015.
OLGA	TBD	Input and output	Sethna et al. Bioinformatics, 2019.
Partis	TBD	Output	Ralph & Matsen. PLoS Comput Biol, 2016.
SONAR	3	Output	Schramm et al. Front Immunol, 2016.
TRIgS	2	Input	Lees & Shepherd. J Immunol Res, 2015.
VDJServer	1.2.0	Input and output	Christley et al. Front Immunol, 2018
Vidjil-algo	2018.1	Output	Giraud et al. BMC Genomics, 2014.
Vidjil Web Platform	TBD	Input and conversion	Duez et al. PLoS ONE, 2016.

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