AIRR R Reference Library¶

An R library providing AIRR schema definitions and read, write, and validation functions for AIRR standard formatted data files.

Download & Installation

To install the latest release from CRAN:

install.packages("airr")

To build from the source code, first install the build dependencies:

install.packages(c("devtools", "roxygen2"))

To install the latest development code via devtools:

library(devtools)
install_github("airr-community/airr-standards/lang/R@master")

Note, using install_github will not build the documentation. To generate the documentation, clone the repository and build as normal. Then run the following R commands from the package root lang/R:

library(devtools)
install_deps(dependencies=T)
document()
install()
test()