Commandline Tools#
airr-tools#
AIRR Community Standards utility commands.
usage: airr-tools [-h] [--version] ...
- -h, --help#
show this help message and exit
- --version#
show program’s version number and exit
airr-tools merge#
Merge AIRR rearrangement files.
usage: airr-tools merge [--version] [-h] -o OUT_FILE [--drop] -a AIRR_FILES
[AIRR_FILES ...]
- --version#
show program’s version number and exit
- -h, --help#
show this help message and exit
- -o <out_file>#
Output file name.
- --drop#
If specified, drop fields that do not exist in all input files. Otherwise, include all columns in all files and fill missing data with empty strings.
- -a <airr_files>#
A list of AIRR rearrangement files.
airr-tools validate#
Validate AIRR files.
usage: airr-tools validate [--version] [-h] ...
- --version#
show program’s version number and exit
- -h, --help#
show this help message and exit
airr-tools validate rearrangement#
Validate AIRR rearrangement files.
usage: airr-tools validate rearrangement [--version] [-h] -a AIRR_FILES
[AIRR_FILES ...]
- --version#
show program’s version number and exit
- -h, --help#
show this help message and exit
- -a <airr_files>#
A list of AIRR rearrangement files.
airr-tools validate repertoire#
Validate AIRR repertoire metadata files.
usage: airr-tools validate repertoire [--version] [-h] -a AIRR_FILES
[AIRR_FILES ...]
- --version#
show program’s version number and exit
- -h, --help#
show this help message and exit
- -a <airr_files>#
A list of AIRR repertoire metadata files.